Auto-Label Biomedical Terms with BioBert/BERN Api
Updated: Jan 6
Here we will use the BERN Api that uses the pre-trained bioBert NLP model to automatically identify and label each biomedical term in a set of text. In this case, we will be using all the comments from a Rhonda Patrick (Found My Fitness) Youtube video.
Graph: Top biomedical terms listed in all comments so far.
Graph: Add More Categories like Mickey Mouse!:
Zero-Shot Classification Analysis of the same text sample as above. This time using categories found in the graph above and a couple fun extras thrown in like "Mickey Mouse" to keep the model honest.
This time we are using the "bart-large-mnli" model for inference.
Full Code Walk-Thru:
click the arrow under the "search" icon to navigate or GO HERE for the best experience.
all code can be found and cloned on my GitHub